PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G182100.1
Common NameB456_003G182100, LOC105789352
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 550aa    MW: 60862.1 Da    PI: 6.0116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G182100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12385430454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Gorai.003G182100.1 385 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 430
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-5847228IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39381430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18384450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-14384435No hitNo description
PfamPF000103.3E-10385430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17385451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-16387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MNLWSDDNTS VMESFMSSDI SALWPPPPPP PPPQQSQPSV PLNQDSLQQR LQALLEGVRN  60
CWTYAIFWQS SYDYAGAAVL GWGDGYYKGE EDKEKAKSKA SLSTIAEQQH RRKVLRELNS  120
LISGSTATTD DAVDEEVTDT EWFFLVSMTQ SFVNGNGLPG QAFFNSCPVW VAGSDRLANS  180
TCERAKQGRV FGLQTIVCIP LANGVVELGS SEFIIQSSDL VNKVRALFNG IEAETWSMSN  240
NTDDPSSFWI SDPNNINNQN PSSSSLTENP SSIHGSLHFN NYGNSFSHLL KPESGEILNF  300
GESKGIRNGN LISRKKRSPS NEEGMLSFTS DVMKSGGGGD SDHSDLEVSV IKEADSARVT  360
ITAEPEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL  420
GDAISYINEL KIKLQNADSK KEELHKQLEE TKKEGQRGGL TTSHKLLELD IDVKTIGLDA  480
MIRIQSNKKN HPAARLMAAL QELDLDVHHA SVSVVNDLMI QQVNVKMGNQ FYNQEQLRIA  540
LTSKVGDPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-72422294193Transcription factor MYC3
4rqw_B3e-72422294193Transcription factor MYC3
4rs9_A3e-72422294193Transcription factor MYC3
4yz6_A3e-72422294193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366374KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3585409e-51FJ358540.1 Gossypium hirsutum bHLH domain protein (bHLH1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472146.10.0PREDICTED: transcription factor MYC4-like
SwissprotO496870.0MYC4_ARATH; Transcription factor MYC4
TrEMBLA0A0D2QVB10.0A0A0D2QVB1_G
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-163bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]